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An XML-Based Approach to Integrating Heterogeneous Yeast Genome Data

Overview With the increasing use of eXtensible Mark Language (XML) in the bioinformatics domain, the paper demonstrates how to use XML to standardize the exchange of a variety of types of yeast data between different resources. In particular, they propose a standard XML format called "Yeast Hub XML" (YHX). This format consists of: metadata and data. While the former describes the resource and data structure, the latter is used to represent the data. In addition, they apply various XML-related technologies including XPath and XSLT to query, integrate, and transform multiple XML datasets. They have implemented a prototype yeast hub server that allows sharing, querying, and integration of different types and formats of yeast genome data that are located in disparate sources.

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Publisher
Yale University
File Format
PDF
Date Published
Dec 4, 2008
Format
White Papers
Topics
XML

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